Wheat
- Family : Poaceae
- Genome : Triticum aestivum L. : hexaploid (6n = 42) / Triticum durum : tetraploid (4n = 28)
Links :
-
International Wheat Genome Sequencing Consortium (IWGSC) :
http://www.wheatgenome.org/ -
Wheat data repository at URGI :
http://wheat-urgi.versailles.inra.fr/ -
Chromosome-based BAC libraries construction at the Institute of Experimental Botany :
http://olomouc.ueb.cas.cz/dna-libraries/cereals -
Why sequencing the wheat genome is crucial?
http://newfoodeconomy.com/cracking-the-wheat-genome/
BAC Libraries :
| Species | Library | Ecotype | Coverage |
|---|---|---|---|
| Triticum aestivum | Tae-B-Chinese spring | Chinese Spring | 9.0 X |
| Triticum aestivum | Tae-B-CsE | Chinese Spring | 2.0 X |
| Triticum aestivum | Tae-B-Renan | renan | 5.6 X |
| Triticum turgidum | Ttu-B-LDN65 | Langdon | 5.0 X |
| Triticum turgidum | Ttu-B-TTD140 | TTD140 | 3.3 X |
Non Gridded BAC Libraries :
| Species | Library | Ecotype | Coverage |
|---|---|---|---|
| Triticum aestivum | Tae-B-SVMA10903_ng | SVMA10903 | 5.4 X |
| Triticum aestivum | Tae-B-4152_ng | 4152 | 2.7 X |
| Triticum aestivum | Tae-B-492_ng | 492Tin | 3.8 X |
| Triticum aestivum | Tae-B-82036_ng | CM82036 | 4.4 X |
Chromosome Specific BAC Libraries :
IWGSC progress overview :
| 1A | 2A | 3A | 4A | 5A | 6A | 7A | 1B | 2B | 3B | 4B | 5B | 6B | 7B | 1D | 2D | 3D | 4D | 5D | 6D | 7D | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Physical Map |
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| Survey Sequence |
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| Reference Pseudomolecule |
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Source : http://www.wheatgenome.org/
| Species | Library | Ecotype | Coverage | Associated Data at URGI |
|---|---|---|---|---|
| Triticum aestivum | TaaCsp1ALhA | Chinese Spring | 8.0 X | Chromosome 1A |
| Triticum aestivum | TaaCsp1ALhB | Chinese spring | 7.7 X | Chromosome 1A |
| Triticum aestivum | TaaCsp1AShA | Chinese spring | 11.8 X | Chromosome 1A |
| Triticum aestivum | TaaCsp1BLhA | Chinese Spring | 15.4 X | Chromosome 1B |
| Triticum aestivum | TaaCsp1BS-CTGordered | Chinese Spring | 1.2 X | Chromosome 1B |
| Triticum aestivum | TaaCsp1BShA | Chinese Spring | 15.7 X | Chromosome 1B |
| Triticum aestivum | TaaCsp1BShA-MTPorder | Chinese Spring | 1.2 X | Chromosome 1B |
| Triticum aestivum | TaaCsp146eA | Chinese spring | 1.3 X |
Chromosome 1D Chromosome 4D Chromosome 6D |
| Triticum aestivum | TaaCsp146hB | Chinese spring | 6.9 X |
Chromosome 1D Chromosome 4D Chromosome 6D |
| Triticum aestivum | TaaCsp146hC | Chinese spring | 7.4 X |
Chromosome 1D Chromosome 4D Chromosome 6D |
| Triticum aestivum | TaaCsp2ALhA | Chinese spring | 15.8 X | Chromosome 2A |
| Triticum aestivum | TaaCsp2AShA | Chinese spring | 15.4 X | Chromosome 2A |
| Triticum aestivum | TaaCsp2BLhA | Chinese spring | 15.1 X | Chromosome 2B |
| Triticum aestivum | TaaCsp2BShA | Chinese spring | 15.6 X | Chromosome 2B |
| Triticum aestivum | TaaCsp2DLhA | Chinese Spring | 15.3 X | Chromosome 2D |
| Triticum aestivum | TaaCsp2DShA | Chinese Spring | 15.6 X | Chromosome 2D |
| Triticum aestivum | TaaCsp3ALhA | Chinese spring | 10.2 X | Chromosome 3A |
| Triticum aestivum | TaaCsp3ALhB | Chinese spring | 5.2 X | Chromosome 3A |
| Triticum aestivum | TaaCsp3AShA | Chinese spring | 10.9 X | Chromosome 3A |
| Triticum aestivum | TaaCsp3AShB | Chinese spring | 15.9 X | Chromosome 3A |
| Triticum aestivum | TaaCsp3BFhA | Chinese Spring | 7.0 X | Chromosome 3B |
| Triticum aestivum | TaaCsp3BFhB | Chinese Spring | 10.5 X | Chromosome 3B |
| Triticum aestivum | TaaCsp3DLhA | Chinese Spring | 11.2 X | Chromosome 3D |
| Triticum aestivum | TaaCsp3DShA | Chinese Spring | 11.0 X | Chromosome 3D |
| Triticum aestivum | TaaCsp4ALha | Chinese spring | 17.3 X | Chromosome 4A |
| Triticum aestivum | TaaCsp4AShA | Chinese spring | 16.6 X | Chromosome 4A |
| Triticum aestivum | TaaCsp4BLhA | Chinese spring | 15.0 X | Chromosome 4B |
| Triticum aestivum | TaaCsp4BShA | Chinese spring | 15.4 X | Chromosome 4B |
| Triticum aestivum | TaaCsp4BShA-MTPorder | Chinese Spring | 1.3 X | Chromosome 4B |
| Triticum aestivum | TaaCsp5ALhA | Chinese spring | 18.3 X | Chromosome 5A |
| Triticum aestivum | TaaCsp5AShA | Chinese spring | 16.5 X | Chromosome 5A |
| Triticum aestivum | TaaCsp5BLhA | Chinese spring | 15.7 X | Chromosome 5B |
| Triticum aestivum | TaaCsp5BShA | Chinese spring | 15.8 X | Chromosome 5B |
| Triticum aestivum | TaaCsp5DLhA | chinese spring | 16.5 X | Chromosome 5D |
| Triticum aestivum | TaaCsp5DShA | chinese spring | 17.0 X | Chromosome 5D |
| Triticum aestivum | TaaCsp5DSordv2 | chinese spring | 1.3 X | Chromosome 5D |
| Triticum aestivum | TaaCsp6ALhA | Chinese Spring | 15.7 X | Chromosome 6A |
| Triticum aestivum | TaaCsp6AShA | Chinese Spring | 16.0 X | Chromosome 6A |
| Triticum aestivum | TaaCsp6BLhA | Chinese Spring | 18.0 X | Chromosome 6B |
| Triticum aestivum | TaaCsp6BShA | Chinese Spring | 15.3 X | Chromosome 6B |
| Triticum aestivum | TaaCsp7ALhA | chinese spring | 15.3 X | Chromosome 7A |
| Triticum aestivum | TaaCsp7AShA | chinese spring | 15.4 X | Chromosome 7A |
| Triticum aestivum | TaaCsp7BLhA | Chinese spring | 15.1 X | Chromosome 7B |
| Triticum aestivum | TaaCsp7BShA | Chinese spring | 12.5 X | Chromosome 7B |
| Triticum aestivum | TaaCsp7BShB | Chinese spring | 5.8 X | Chromosome 7B |
| Triticum aestivum | TaaCsp7DLhA | Chinese spring | 14.8 X | Chromosome 7D |
| Triticum aestivum | TaaCsp7DShA | Chinese spring | 12.2 X | Chromosome 7D |
Minimum Tiling Path Chromosome Specific BAC Libraries :
| Species | Library | Ecotype | Coverage | Associated Data at URGI |
|---|---|---|---|---|
| Triticum aestivum | TaaCsp1ALhMTP | Chinese spring | 1.0 X | Chromosome 1A |
| Triticum aestivum | TaaCsp1AShMTP | Chinese spring | 1.0 X | Chromosome 1A |
| Triticum aestivum | TaaCsp1BLhAMTPv1 | Chinese Spring | 1.0 X | Chromosome 1B |
| Triticum aestivum | TaaCsp1BLMTPv2 | Chinese Spring | 15.4 X | Chromosome 1B |
| Triticum aestivum | TaaCsp1BLhA-MTPorder | Chinese Spring | 1.0 X | Chromosome 1B |
| Triticum aestivum | TaaCsp1BShMTP | Chinese Spring | 1.8 X | Chromosome 1B |
| Triticum aestivum | Tae-B-146hBMTP | Chinese spring | 6.9 X |
Chromosome 1D Chromosome 4D Chromosome 6D |
| Triticum aestivum | TaaCsp2ALMTP | Chinese spring | 1.9 X | Chromosome 2A |
| Triticum aestivum | TaaCsp2ASMTP | Chinese spring | 1.5 X | Chromosome 2A |
| Triticum aestivum | TaaCsp2BLMTP | Chinese spring | 1.4 X | Chromosome 2B |
| Triticum aestivum | TaaCsp2BSMTP | Chinese spring | 1.3 X | Chromosome 2B |
| Triticum aestivum | TaaCsp2DLMTP | Chinese Spring | 1.5 X | Chromosome 2D |
| Triticum aestivum | TaaCsp2DSMTP | Chinese Spring | 1.3 X | Chromosome 2D |
| Triticum aestivum | TaaCsp3BFhA_MTP | Chinese Spring | 1.0 X | Chromosome 3B |
| Triticum aestivum | TaaCsp3BFh_MTPv2 | Chinese spring | 1.0 X | Chromosome 3B |
| Triticum aestivum | TaaCsp3DLhA MTP | Chinese Spring | 1.0 X | Chromosome 3D |
| Triticum aestivum | TaaCsp3DLhAMTPv2 | Chinese Spring | 1.5 X | Chromosome 3D |
| Triticum aestivum | TaaCsp3DShaMTP | Chinese Spring | 1.0 X | Chromosome 3D |
| Triticum aestivum | TaaCsp4ALMTP | Chinese spring | 2.0 X | Chromosome 4A |
| Triticum aestivum | TaaCsp4ASMTP | Chinese spring | 1.8 X | Chromosome 4A |
| Triticum aestivum | TaaCsp4BLMTP | Chinese spring | 1.5 X | Chromosome 4B |
| Triticum aestivum | TaaCsp4BL-MTPorder | Chinese spring | 1.4 X | Chromosome 4B |
| Triticum aestivum | TaaCsp4BSMTP | Chinese spring | 1.9 X | Chromosome 4B |
| Triticum aestivum | TaaCsp5ALMTP | Chinese spring | 1.0 X | Chromosome 5A |
| Triticum aestivum | TaaCsp5ALMTPv2 | Chinese spring | 2.0 X | Chromosome 5A |
| Triticum aestivum | TaaCsp5ASMTP | Chinese spring | 1.6 X | Chromosome 5A |
| Triticum aestivum | TaaCsp5ASMTPv2 | Chinese spring | 2.2 X | Chromosome 5A |
| Triticum aestivum | TaaCsp5BLMTP | Chinese spring | 1.3 X | Chromosome 5B |
| Triticum aestivum | TaaCsp5BSMTP | Chinese spring | 1.3 X | Chromosome 5B |
| Triticum aestivum | TaaCsp5DLMTP | chinese spring | 1.2 X | Chromosome 5D |
| Triticum aestivum | TaaCsp7ALMTP | chinese spring | 1.8 X | Chromosome 7A |
| Triticum aestivum | TaaCsp7ASMTP | chinese spring | 1.9 X | Chromosome 7A |
| Triticum aestivum | TaaCsp7BSMTP | Chinese spring | 1.6 X | Chromosome 7B |
| Triticum aestivum | TaaCsp7DLMTP | Chinese spring | 14.8 X | Chromosome 7D |
| Triticum aestivum | TaaCsp7DSMTP | Chinese spring | 1.4 X | Chromosome 7D |
Genomic Tools :
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