Sandrine Arribat

Sandrine Arribat

Arrival date : 2017

Departure date : 30/06/2021

Status : Research Assistant

Roles :

- Genome optical mapping project leader- High molecular weight DNA extraction- BAC library construction- Production/Screening genomic tools

Last completed degree : Agricultural engineers' degree of VetAgro Sup (Institue of higher education, Clermont-Ferrand) - Master's degree in plant genetic and physiology (Université Clermond-Ferrand II)

Professional experiences :

- In charge of Affymetrix projects in the transcriptomic platform (URGV, INRA Evry)- Development of PCR and DNA microarray to detect and identify plant pathogenic bacterium in UMR PVBMT (CIRAD, Réunion)- Statistical and transcriptomic analyses of different projects within the plant fibers team (UGSF, Université Lille)


    abricotier

    Comparative genomics of Armeniaca (apricot) species

    Sustainable fruit production relies on the introduction of genetic resistance to diseases and pests from wild populations into the cultivated germplasm....

    Added on : 05 November 2019

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    Sustainable fruit production relies on the introduction of genetic resistance to diseases and pests from wild populations into the cultivated germplasm.

    For identifying genes linked to agronomically important traits, we collected wild apricot populations of Apricot related species, they present a high level of genotypic and phenotypic diversity.

    De novo genome assemblies were performed for the most important Armeniaca Fruit species (P.armeniaca, P. sibirica, P. mandshurica), in order to facilitate the introgression of valuable genes into the cultivated germplasm.

    In the current project, we propose to compare their genome architecture and identify possible structural re-arrangements during Armeniaca evolutionary history.

     

    • Project coordinator

    Véronique DECROOCQ

    INRA UMR BFP 1332, Virologie

    veronique.decroocq@inra.fr

    Laboratory website : https://www6.bordeaux-aquitaine.inra.fr/bfp

     

    • Other Project Partner(s)

    Alexis GROPPI

    Université de Bordeaux CBIB

    alexis.groppi@u-bordeaux.fr

    Laboratory website : https://www.cbib.u-bordeaux.fr/

     

     

    • Realated publications

    Groppi Alexis, Shuo Liu, Amandine Cornille, Stéphane Decroocq, Quynh Trang Bui, David Tricon, Corinne Cruaud, Sandrine Arribat, Caroline Belser, William Marande, Jérôme Salse, Cécile Huneau, Nathalie Rodde, Wassim Rhalloussi, Stéphane Cauet, Benjamin Istace, Erwan Denis, Sébastien Carrère, Jean-marc Audergon, Guillaume Roch, Patrick Lambert, Tetyana Zhebentyayeva, Wei-sheng Liu, Olivier Bouchez, Céline Lopez-roques, Rémy-félix Serre, Robert Debuchy, Joseph Tran, Patrick Wincker, Xilong Chen, Pierre Pétriacq, Aurélien Barre, Macha Nikolski, Jean-marc Aury, Albert Glenn Abbott, Tatiana Giraud, and Véronique Decroocq. 2021. Population genomics of apricots unravels domestication history and adaptive events. Nature Communications 1–16. doi: 10.1038/s41467-021-24283-6.

     

    • Funding sources

    - France Génomique  SWAG project

    logo france génomique 2

    - ANR ABRIWG project

    ANR

    - PRIMA FREECLIMB

    prima FREECLIMB_inra_logo

     

    • Start year of the project :2019
    • Duration: 2 years